About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90729372_90730154_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
90729372 - 90730154
Intron Length:
783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTGA
5'SS Class:
strong_major
3'SS Sequence:
AATATTTGACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATTAAAT
Flanking Amino Acid:
DLAHLKTFDRGIVWNTDLVE
Intron Amino Acid Position:
496

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
76.9
34.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
58.9
0.2
1.1
52.5
46
Minor 5ss
39.6
-1.2
2.8
50.5
45.7
Minor BPS
60.4
0.4
1.9
81.52
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007028
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007326
90728167 - 90739065
10899