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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90730267_90730488_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90730267 - 90730488
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TACTGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTGTTTTTACT
Flanking Amino Acid:
TSEVRLNMQKTMQSHAAVFR
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.6
0.66
0.9
73.1
36.9
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
63.1
0.49
1.7
82.93
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007028
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007326
90728167 - 90739065
10899