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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90730608_90731912_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90730608 - 90731912
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCGTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTTCCGTAATA
Flanking Amino Acid:
ALTIAETCKPGEPVPSIKPD
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.6
38.4
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
73.8
0.53
0.9
70.3
35.1
Minor 5ss
36.7
-1.5
3.2
48.7
41.4
Minor BPS
73.5
0.73
2
87.11
31.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007028
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007326
90728167 - 90739065
10899