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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90733719_90734965_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90733719 - 90734965
Intron Length:
1247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTCATGTGATG
Flanking Amino Acid:
DLEFVQFHPTGIYGAGCLIT
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
80.4
33.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
88.3
0.86
0.7
83.7
24.4
Minor 5ss
40
-1.1
3.2
56.4
48
Minor BPS
44.3
-0.5
2.2
56.38
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007028
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007326
90728167 - 90739065
10899