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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90735091_90736379_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90735091 - 90736379
Intron Length:
1289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAATGTAA
5'SS Class:
major
3'SS Sequence:
GTGTTTTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAACT
Flanking Amino Acid:
FRAKNTVIATGGYGRTYFSC
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
64.7
37.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.4
0.66
0.8
77.9
36.6
Minor 5ss
35.7
-1.6
3.2
38.1
46.9
Minor BPS
76.4
0.91
1.5
91.48
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007028
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007326
90728167 - 90739065
10899