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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90736529_90737735_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90736529 - 90737735
Intron Length:
1207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
HSLLHTLYGRSLRYDTSYFV
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.9
41.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82
0.72
0.8
74.8
35.8
Minor 5ss
33.4
-1.9
2.9
35.8
40.7
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007028
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007326
90728167 - 90739065
10899