About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90738177_90738602_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90738177 - 90738602
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTGTTTTCATT
Flanking Amino Acid:
PTRSHTVAAQGGINAALGNM
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
100
1.24
0.5
100
0
Major PPT
91.2
0.93
0.7
89.3
26.1
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
50.7
0.1
1.8
71.21
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007028
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007326
90728167 - 90739065
10899