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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90738766_90738978_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
90738766 - 90738978
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTTCA
5'SS Class:
major
3'SS Sequence:
TGTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GTGACCATAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
70.7
35.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
87.4
0.84
0.7
81.2
36.5
Minor 5ss
47.1
-0.3
2.4
59.5
45
Minor BPS
61.2
0.35
1.7
70.37
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007028
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007326
90728167 - 90739065
10899