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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90741523_90742325_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90741523 - 90742325
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGCC
5'SS Class:
major
3'SS Sequence:
TCGTACGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GTTGCTCTAACC
Flanking Amino Acid:
GPPLPPAPLSGWIWTRECQK
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
62.8
37.8
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
73.4
0.53
1
69.3
41.4
Minor 5ss
25.5
-2.8
3.4
34
41.8
Minor BPS
59.4
0.28
1.8
71.68
39.5

Associated Gene:

Gene:
CCDC127
Ensembl Gene ID:
ENSAPLG00000029505
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018404
90741318 - 90744213
2896