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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90762474_90764084_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90762474 - 90764084
Intron Length:
1611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTGTGTTTACA
Flanking Amino Acid:
STCPVTANRTGYIEECAKSS
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
85.9
0.81
0.9
79.9
37.7
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
48.5
-0.1
2.4
70.34
42.1

Associated Gene:

Gene:
SLC6A19
Ensembl Gene ID:
ENSAPLG00000005930
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006209
90753745 - 90775713
21969