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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90764267_90765030_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90764267 - 90765030
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCTAC
5'SS Class:
major
3'SS Sequence:
GCTCCTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTGTATTTAACT
Flanking Amino Acid:
TIRGIETTGKAVYVTSTLPY
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.1
62.3
39.2
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
69.7
0.44
0.9
65
36.3
Minor 5ss
43.1
-0.8
3.1
59
45.8
Minor BPS
76
0.89
1.4
88.78
36.1

Associated Gene:

Gene:
SLC6A19
Ensembl Gene ID:
ENSAPLG00000005930
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006209
90753745 - 90775713
21969