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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90765142_90765909_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90765142 - 90765909
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
TCTGATACCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
ACAATCTTAAAG
Flanking Amino Acid:
NGIVYLFTPNVTELANPVTW
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.3
72.3
39.5
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
70.3
0.46
0.9
66.6
39
Minor 5ss
35.9
-1.6
2.9
43.9
36.8
Minor BPS
52.6
-0
1.5
52.46
41.8

Associated Gene:

Gene:
SLC6A19
Ensembl Gene ID:
ENSAPLG00000005930
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006209
90753745 - 90775713
21969