About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90766023_90767850_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90766023 - 90767850
Intron Length:
1828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CTCTGAATTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
TCTCTCTGAATT
Flanking Amino Acid:
LISFSSYNSVHNNCEKDAVI
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
73.6
0.53
0.9
66.2
38.5
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
64.5
0.53
1.4
77.82
38.8

Associated Gene:

Gene:
SLC6A19
Ensembl Gene ID:
ENSAPLG00000005930
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006209
90753745 - 90775713
21969