About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90770090_90771522_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90770090 - 90771522
Intron Length:
1433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAA
U12 Branch Point Sequence:
TTGTCTTTCACA
Flanking Amino Acid:
PPKWPKELVTGLICAGSYLI
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
67.6
0.44
1.2
69.9
35.3
Major PPT
84.2
0.77
0.8
79.7
32.4
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
68.9
0.59
1.7
78.71
38.4

Associated Gene:

Gene:
SLC6A19
Ensembl Gene ID:
ENSAPLG00000005930
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006209
90753745 - 90775713
21969