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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90771683_90774183_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90771683 - 90774183
Intron Length:
2501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCGTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGGCTCTGAACT
Flanking Amino Acid:
FSVVYIYGIDRFNKDIEFMI
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77
0.61
0.8
70
36.5
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
62.2
0.46
1.5
75.09
41.2

Associated Gene:

Gene:
SLC6A19
Ensembl Gene ID:
ENSAPLG00000005930
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006209
90753745 - 90775713
21969