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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90774347_90775503_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90774347 - 90775503
Intron Length:
1157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCACAT
U12 Branch Point Sequence:
CTTCCTACAGCT
Flanking Amino Acid:
LLYSVWDPSYEEFPKTQKVG
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
89.1
24.1
Major BPS
65.1
0.38
1.1
71.2
35.2
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
41.7
-0.9
2.8
56
41.5
Minor BPS
45
-0.3
2
66.75
43.8

Associated Gene:

Gene:
SLC6A19
Ensembl Gene ID:
ENSAPLG00000005930
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006209
90753745 - 90775713
21969