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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90785764_90787554_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90785764 - 90787554
Intron Length:
1791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTCTC
5'SS Class:
major
3'SS Sequence:
GTGTCTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TTTTTCTAAGCT
Flanking Amino Acid:
SAISPYLGGVGVGSWMVSVL
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.8
42.2
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
79.4
0.66
0.9
73.5
37
Minor 5ss
37.5
-1.4
3.3
49.5
41.3
Minor BPS
64.9
0.55
1.9
87.32
38.6

Associated Gene:

Gene:
SLC6A18
Ensembl Gene ID:
ENSAPLG00000023971
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026403
90775182 - 90802532
27351