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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90790663_90794797_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
90790663 - 90794797
Intron Length:
4135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTATTACCA
5'SS Class:
major
3'SS Sequence:
TTTCAGCTGAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTC
Flanking Amino Acid:
GLAYLFTPDVILKNPRVWLD
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.8
0.26
1.1
53.5
37.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
58.8
0.2
1.2
59.7
40.6
Minor 5ss
40.1
-1.1
3
49.3
40.8
Minor BPS
56.7
0.19
1.7
69.43
36.3

Associated Gene:

Gene:
SLC6A18
Ensembl Gene ID:
ENSAPLG00000023971
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026403
90775182 - 90802532
27351