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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90795458_90796130_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90795458 - 90796130
Intron Length:
673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
ATTTCCATACGT
Flanking Amino Acid:
ATTGYWDCLDRNIISIINEF
Intron Amino Acid Position:
332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
73.1
0.52
1
69.1
37
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
52.7
0.16
2.2
79.27
42.7

Associated Gene:

Gene:
SLC6A18
Ensembl Gene ID:
ENSAPLG00000023971
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026403
90775182 - 90802532
27351