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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90796288_90798241_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90796288 - 90798241
Intron Length:
1954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTATAA
5'SS Class:
major
3'SS Sequence:
GTGAATTCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
SCDLQEFLDQSVSGSGLAFI
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
66.9
34.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
69.8
0.45
1
61.5
44.2
Minor 5ss
36.3
-1.6
3.2
47.5
47.9
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
SLC6A18
Ensembl Gene ID:
ENSAPLG00000023971
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026403
90775182 - 90802532
27351