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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90798447_90799371_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90798447 - 90799371
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
GTTACAAAAATA
Flanking Amino Acid:
SKSIPKELLSGIICLVSFLI
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.4
33.3
Major BPS
60.3
0.26
1
65.5
28
Major PPT
83.9
0.76
0.7
81.3
23.8
Minor 5ss
38.5
-1.3
3.4
52.2
46
Minor BPS
43.9
-0.4
2.1
59.33
40.1

Associated Gene:

Gene:
SLC6A18
Ensembl Gene ID:
ENSAPLG00000023971
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026403
90775182 - 90802532
27351