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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90799532_90801247_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90799532 - 90801247
Intron Length:
1716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TCCTCTTTAAAG
Flanking Amino Acid:
TGVVYVYKIKRFSEDVKWMT
Intron Amino Acid Position:
506

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
73.2
0.52
1
73.6
28.8
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
65.3
0.34
1.5
63.96
44.2

Associated Gene:

Gene:
SLC6A18
Ensembl Gene ID:
ENSAPLG00000023971
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026403
90775182 - 90802532
27351