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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90801411_90802319_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90801411 - 90802319
Intron Length:
909

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTACGTTCC
5'SS Class:
major
3'SS Sequence:
TTCATCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTCTTCATCT
Flanking Amino Acid:
PTYTAWNPKHEDFPMKEEKA
Intron Amino Acid Position:
561

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.3
66.9
39.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
73.9
0.54
0.8
69
31.5
Minor 5ss
41.8
-0.9
2.9
52.5
37.8
Minor BPS
66.8
0.61
1.8
88.14
37.2

Associated Gene:

Gene:
SLC6A18
Ensembl Gene ID:
ENSAPLG00000023971
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026403
90775182 - 90802532
27351