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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90810481_90810817_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90810481 - 90810817
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGATAT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTGTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCAGTATCT
Flanking Amino Acid:
CYSMLKAKNPGFTLGNRGAS
Intron Amino Acid Position:
1207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.9
32.9
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
74.6
0.55
0.9
66.1
40.8
Minor 5ss
38.5
-1.3
3.3
55.8
48.4
Minor BPS
52.5
0.16
2.5
85.15
41.2

Associated Gene:

Gene:
TERT
Ensembl Gene ID:
ENSAPLG00000004975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024751
90806509 - 90835778
29270
ENSAPLT00000021822
90806509 - 90835778
29270
ENSAPLT00000005206
90806509 - 90835778
29270
ENSAPLT00000046805
90806509 - 90835778
29270
ENSAPLT00000044300
90808872 - 90835778
26907