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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90810943_90812930_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90810943 - 90812930
Intron Length:
1988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TTGTGATTAAAC
Flanking Amino Acid:
VYKIFLLQAYRFHACVIQLP
Intron Amino Acid Position:
1165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
67.1
44.6
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
74.5
0.55
1
70.8
39
Minor 5ss
33.2
-1.9
3.1
44.2
43.6
Minor BPS
51.6
0.03
2.1
68.86
42.3

Associated Gene:

Gene:
TERT
Ensembl Gene ID:
ENSAPLG00000004975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021822
90806509 - 90835778
29270
ENSAPLT00000046805
90806509 - 90835778
29270
ENSAPLT00000005206
90806509 - 90835778
29270
ENSAPLT00000044300
90808872 - 90835778
26907
ENSAPLT00000024751
90806509 - 90835778
29270