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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90812993_90813316_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90812993 - 90813316
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACTA
5'SS Class:
major
3'SS Sequence:
TGTTCTGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
ATGGCTCTATTT
Flanking Amino Acid:
KCHGLFLDLQINSLKTVFIN
Intron Amino Acid Position:
1145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
67.8
39.3
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
77.4
0.62
0.9
69.7
41.5
Minor 5ss
28.7
-2.4
3.3
38.1
46.8
Minor BPS
45.3
-0.2
1.9
62.28
42.6

Associated Gene:

Gene:
TERT
Ensembl Gene ID:
ENSAPLG00000004975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005206
90806509 - 90835778
29270
ENSAPLT00000046805
90806509 - 90835778
29270
ENSAPLT00000044300
90808872 - 90835778
26907
ENSAPLT00000024751
90806509 - 90835778
29270
ENSAPLT00000021822
90806509 - 90835778
29270