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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90814910_90816971_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90814910 - 90816971
Intron Length:
2062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAT
5'SS Class:
strong_major
3'SS Sequence:
GTATTTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAG
U12 Branch Point Sequence:
CTTAGGCTAACT
Flanking Amino Acid:
PHLTHARTFLRTLAMGIPEY
Intron Amino Acid Position:
1040

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
34.9
Major BPS
60.9
0.27
1.7
71.4
45.1
Major PPT
79.8
0.67
1
77.1
41.8
Minor 5ss
55.7
0.19
2.5
72.7
44.5
Minor BPS
43.2
-0.4
2.6
69.09
47.3

Associated Gene:

Gene:
TERT
Ensembl Gene ID:
ENSAPLG00000004975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044300
90808872 - 90835778
26907
ENSAPLT00000024751
90806509 - 90835778
29270
ENSAPLT00000021822
90806509 - 90835778
29270
ENSAPLT00000005206
90806509 - 90835778
29270
ENSAPLT00000046805
90806509 - 90835778
29270