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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90817740_90819511_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90817740 - 90819511
Intron Length:
1772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTCTTTTATT
Flanking Amino Acid:
LNNNILEIERSYYLQCSGIP
Intron Amino Acid Position:
978

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
85.3
0.79
0.7
81.3
30.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
75.6
0.89
1.5
91.64
31.3

Associated Gene:

Gene:
TERT
Ensembl Gene ID:
ENSAPLG00000004975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021822
90806509 - 90835778
29270
ENSAPLT00000005206
90806509 - 90835778
29270
ENSAPLT00000046805
90806509 - 90835778
29270
ENSAPLT00000044300
90808872 - 90835778
26907
ENSAPLT00000024751
90806509 - 90835778
29270