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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90821321_90821695_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90821321 - 90821695
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTATGACTT
5'SS Class:
major
3'SS Sequence:
ATTTAATATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATA
Flanking Amino Acid:
GKTRKLYKRHVSTFKDFMPD
Intron Amino Acid Position:
918

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
70.2
39.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.9
0.54
1
66.9
42.5
Minor 5ss
46.4
-0.4
3.1
70.1
40.3
Minor BPS
71.7
0.68
1.4
78.61
31.3

Associated Gene:

Gene:
TERT
Ensembl Gene ID:
ENSAPLG00000004975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046805
90806509 - 90835778
29270
ENSAPLT00000044300
90808872 - 90835778
26907
ENSAPLT00000021822
90806509 - 90835778
29270
ENSAPLT00000005206
90806509 - 90835778
29270