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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90821321_90822842_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90821321 - 90822842
Intron Length:
1522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTAATATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATA
Flanking Amino Acid:
GEIPHFYYVKVSTFKDFMPD
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
41.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.9
0.54
1
66.9
42.5
Minor 5ss
49.9
-0
2.8
73.5
43.2
Minor BPS
71.7
0.68
1.4
78.61
31.3

Associated Gene:

Gene:
TERT
Ensembl Gene ID:
ENSAPLG00000004975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024751
90806509 - 90835778
29270