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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90823026_90826356_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90823026 - 90826356
Intron Length:
3331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTTTATT
5'SS Class:
major
3'SS Sequence:
TTCATCTCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTTTCATCT
Flanking Amino Acid:
TLSKESRAKKMNHYNMQLKN
Intron Amino Acid Position:
864

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
81.5
31.4
Major BPS
100
1.24
0.5
100
0
Major PPT
78.5
0.64
0.8
73.8
31.1
Minor 5ss
42.4
-0.8
2.8
59.8
44.7
Minor BPS
54.8
0.23
1.8
75.13
42.3

Associated Gene:

Gene:
TERT
Ensembl Gene ID:
ENSAPLG00000004975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021822
90806509 - 90835778
29270
ENSAPLT00000046805
90806509 - 90835778
29270
ENSAPLT00000044300
90808872 - 90835778
26907
ENSAPLT00000024751
90806509 - 90835778
29270