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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90826547_90830069_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90826547 - 90830069
Intron Length:
3523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TATTGCTTACAC
Flanking Amino Acid:
IWGKLQDIGIRKHFSKVKLR
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
80.2
28.1
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
77.7
0.62
0.9
75.2
39
Minor 5ss
40.9
-1
3.2
56
48.2
Minor BPS
51.8
0.04
2.1
68.79
42.4

Associated Gene:

Gene:
TERT
Ensembl Gene ID:
ENSAPLG00000004975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024751
90806509 - 90835778
29270
ENSAPLT00000021822
90806509 - 90835778
29270
ENSAPLT00000005206
90806509 - 90835778
29270
ENSAPLT00000046805
90806509 - 90835778
29270
ENSAPLT00000044300
90808872 - 90835778
26907