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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90833907_90833981_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
90833907 - 90833981
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAAC
5'SS Class:
strong_major
3'SS Sequence:
AAAGAAGTAACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CATTTCTCAAAG
Flanking Amino Acid:
APNVNQSIPKSDMSRPSLVH
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.8
35.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
48.5
-0
1.1
36.9
43
Minor 5ss
38.6
-1.3
3.1
50.7
46.2
Minor BPS
52.4
-0
1.7
57.83
43.5

Associated Gene:

Gene:
TERT
Ensembl Gene ID:
ENSAPLG00000004975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046805
90806509 - 90835778
29270