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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90834692_90835418_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90834692 - 90835418
Intron Length:
727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGGC
5'SS Class:
major
3'SS Sequence:
TTTCTTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TAAAAACTAATC
Flanking Amino Acid:
DIPRPFSLEQLSSQSEVISR
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
64.8
41.3
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
93.4
0.98
0.5
92.6
17.4
Minor 5ss
35.7
-1.6
3.5
49.7
46.9
Minor BPS
42.7
-0.5
2
52.98
37.3

Associated Gene:

Gene:
TERT
Ensembl Gene ID:
ENSAPLG00000004975
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044300
90808872 - 90835778
26907
ENSAPLT00000024751
90806509 - 90835778
29270
ENSAPLT00000021822
90806509 - 90835778
29270
ENSAPLT00000005206
90806509 - 90835778
29270
ENSAPLT00000046805
90806509 - 90835778
29270