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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90852530_90854775_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90852530 - 90854775
Intron Length:
2246

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCCTT
5'SS Class:
major
3'SS Sequence:
TTTTTTCTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTATGTGTAACT
Flanking Amino Acid:
VVFLVYLYQRWLYPVDKSRV
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
67.1
43.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
85.7
0.8
0.9
81.2
36.5
Minor 5ss
50.2
0.01
2.8
70.5
41.1
Minor BPS
53.2
0.18
2.4
80.24
42

Associated Gene:

Gene:
CLPTM1L
Ensembl Gene ID:
ENSAPLG00000004129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004280
90852129 - 90880490
28362