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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90854892_90857574_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90854892 - 90857574
Intron Length:
2683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
HLPWKAFTYKAFNTFIDDIF
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
82.8
0.74
0.8
78.1
35.3
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
CLPTM1L
Ensembl Gene ID:
ENSAPLG00000004129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004280
90852129 - 90880490
28362
ENSAPLT00000042716
90853675 - 90880490
26816