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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90857620_90857702_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90857620 - 90857702
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTAATCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTATTACTAACT
Flanking Amino Acid:
MLPQLFVNYKMKSVAHLPWK
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
77.6
33.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
74.7
0.56
0.8
67.4
38
Minor 5ss
36.1
-1.6
3.2
46.6
48.7
Minor BPS
59.5
0.38
1.9
82.84
37.6

Associated Gene:

Gene:
CLPTM1L
Ensembl Gene ID:
ENSAPLG00000004129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042716
90853675 - 90880490
26816
ENSAPLT00000004280
90852129 - 90880490
28362