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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90861898_90862887_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90861898 - 90862887
Intron Length:
990

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTGT
5'SS Class:
major
3'SS Sequence:
ATGTGTTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTCTGACTAATT
Flanking Amino Acid:
KWQGIWPKIQFGTYNDSEKK
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.1
71.8
40.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.8
0.65
1
69.7
45.4
Minor 5ss
40.9
-1
3.1
59.4
45
Minor BPS
44.8
-0.3
2.3
65.26
45.5

Associated Gene:

Gene:
CLPTM1L
Ensembl Gene ID:
ENSAPLG00000004129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042716
90853675 - 90880490
26816
ENSAPLT00000004280
90852129 - 90880490
28362