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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90862954_90864139_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90862954 - 90864139
Intron Length:
1186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTAATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAATT
Flanking Amino Acid:
IPAGIGAVIELWKVKKALKM
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.7
0.69
0.9
74.4
39
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
76.9
0.92
1.4
92.73
28.9

Associated Gene:

Gene:
CLPTM1L
Ensembl Gene ID:
ENSAPLG00000004129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042716
90853675 - 90880490
26816
ENSAPLT00000004280
90852129 - 90880490
28362