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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90874831_90876713_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90874831 - 90876713
Intron Length:
1883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTAAACATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CGTGTTTAAACA
Flanking Amino Acid:
LPADVHRYMKMVQLGKTVHY
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
78.6
0.71
1
78.6
31
Major PPT
61.6
0.26
1
52.2
42
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
49
-0
1.8
58.49
42

Associated Gene:

Gene:
CLPTM1L
Ensembl Gene ID:
ENSAPLG00000004129
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042716
90853675 - 90880490
26816
ENSAPLT00000004280
90852129 - 90880490
28362