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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90899739_90904478_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90899739 - 90904478
Intron Length:
4740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCATA
5'SS Class:
major
3'SS Sequence:
ATGTGCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAAAA
Flanking Amino Acid:
LEFAKLVRSLGLKPETLEDD
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.1
38.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.8
0.49
0.9
62.8
43.6
Minor 5ss
37.1
-1.5
3
40.3
45.6
Minor BPS
71.1
0.66
1.3
76.99
33.4

Associated Gene:

Gene:
LPCAT1
Ensembl Gene ID:
ENSAPLG00000003565
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003688
90890432 - 90938336
47905