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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90912292_90914798_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
90912292 - 90914798
Intron Length:
2507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TTCTCCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATC
Flanking Amino Acid:
TITWTWQGPGALEILWLTLC
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.4
67.1
44.6
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
83.1
0.74
0.7
81.5
23.5
Minor 5ss
35.3
-1.7
3.3
44.7
43.5
Minor BPS
70.2
0.62
1.7
81.43
33.4

Associated Gene:

Gene:
LPCAT1
Ensembl Gene ID:
ENSAPLG00000003565
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003688
90890432 - 90938336
47905