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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90914834_90920181_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90914834 - 90920181
Intron Length:
5348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCCGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AGTGCAATAATT
Flanking Amino Acid:
PVVLRYPNKLDTITWTWQGP
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
29.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
72.4
0.5
1
74.8
27.7
Minor 5ss
40.6
-1
2.7
47.5
42.3
Minor BPS
48.7
-0
1.9
69.58
41.1

Associated Gene:

Gene:
LPCAT1
Ensembl Gene ID:
ENSAPLG00000003565
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003688
90890432 - 90938336
47905