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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90922773_90924326_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90922773 - 90924326
Intron Length:
1554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTAT
5'SS Class:
major
3'SS Sequence:
TTTTAACTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
RAQSDGKWPQIMIFPEGTCT
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
68.7
38.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73.1
0.52
1.1
73
36.3
Minor 5ss
37.4
-1.4
3.5
55.6
48.6
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
LPCAT1
Ensembl Gene ID:
ENSAPLG00000003565
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003688
90890432 - 90938336
47905