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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90924440_90931036_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
90924440 - 90931036
Intron Length:
6597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTTTCCTTCCTC
Flanking Amino Acid:
AESKDIPVWGTLIKYIRPVF
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
54
0.1
1
59.7
32.6
Major PPT
79.3
0.66
0.7
77.3
24.7
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
47
-0.2
3.6
77.77
38.8

Associated Gene:

Gene:
LPCAT1
Ensembl Gene ID:
ENSAPLG00000003565
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003688
90890432 - 90938336
47905