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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_90932895_90938219_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
90932895 - 90938219
Intron Length:
5325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
TTGGGTTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAGAAT
U12 Branch Point Sequence:
GTTAGAATAACT
Flanking Amino Acid:
LRLGPLQKAKIAFMTLTLFP
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
62.9
0.32
1.5
72.3
40.4
Major PPT
78.9
0.65
1
72.2
42.7
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
46.5
-0.1
2.3
72.22
43.7

Associated Gene:

Gene:
LPCAT1
Ensembl Gene ID:
ENSAPLG00000003565
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003688
90890432 - 90938336
47905