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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_91046111_91051504_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
91046111 - 91051504
Intron Length:
5394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAA
U12 Branch Point Sequence:
GATAACTGAAAG
Flanking Amino Acid:
KVRFVGRQKEVNKNFAIDLI
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
75.3
40.8
Major BPS
65.6
0.39
0.9
55.4
32.7
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
42.4
-0.8
2.9
60.3
44
Minor BPS
46
-0.4
1.8
50.4
42.2

Associated Gene:

Gene:
NDUFS6
Ensembl Gene ID:
ENSAPLG00000024272
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046238
91045032 - 91053530
8499