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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_91068973_91071880_R

Intron Information:

Intron Rank:
137818
Intron Class:
major
Intron Phase:
Intron Coordinates:
91068973 - 91071880
Intron Length:
2908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
AAATATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TATTTGTAAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
73.5
0.53
1
65.7
44.1
Minor 5ss
42
-0.9
2.8
53.8
43.6
Minor BPS
46.9
-0.2
2.3
65.11
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021651
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044837
91065720 - 91071985
6266