Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_91127988_91132652_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

91127988 - 91132652

Intron Length:

4665

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAAAAA

5'SS Class:

strong_major

3'SS Sequence:

TTCGTCCTATAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

AATAAATTAAAT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

79.3

28.7

Major BPS

73.8

0.59

0.9

26.8

Major PPT

64.2

0.32

1.1

69.1

36.1

Minor 5ss

32.1

-2

39.7

45.8

Minor BPS

48.8

-0

1.9

68.91

40.5

Associated Gene:

Gene:

IRX4

Ensembl Gene ID:

ENSAPLG00000022847

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043347

91123464 - 91132760

9297

ENSAPLT00000021041

91123464 - 91132760

9297