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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_91133038_91192527_F

Intron Information:

Intron Rank:
147854
Intron Class:
major
Intron Phase:
Intron Coordinates:
91133038 - 91192527
Intron Length:
59490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTTCTCCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.2
0.84
0.7
81.4
30.6
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
53.9
0.2
2
76.85
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029588
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017461
91132781 - 91197914
65134